Castañar cave is a subterranean site with an outstanding natural environmental radioactivity. The maintaining of high radon activity of cave air and the detection of spatially anomalies of this gas in some cave emplacements, suggests that some natural geochemical processes are involved on the mobilization of radioactivity sources to cave environment, other than a simple exhalation of radon from the host-rock. The host rocks are interlaid dolostone–metapelite beds with radioactive nuclides of the three actinium, thorium and uranium decay series. In situ measurements on the spatial distribution of radioactivity, uranyl group’s luminescence and radon gas concentrations inside cave were main focus of this work to model lixiviation and deposition mechanisms of radioactive elements from the host rock to the karstic system. In addition, collected micro-samples were also analyzed by a multi-approach suite of analytical techniques: inductively coupled plasma mass spectrometry, environmental scanning electron microscopy with an attached X-ray energy dispersive system and spectral cathodoluminescence detector, thermoluminescence, Raman spectroscopy, X-ray diffraction, differential-thermal and thermogravimetry analysis, Alpha-spectrometry and Gamma-spectrometry techniques. The host metapelitic beds contain Zr(Hf)–Th(U)–Ti–P–REE phases such as zircon, xenotime-(Y), monazite-(Ce, La) and poly-metallic mineralization veins of hydrothermal origin. Carbonated host beds and speleothems show frequently chemical elements leaked from the upper host rock masses. The weathering leakage processes are favored by the existence of pyrite and limonite in the dolostone masses. The cave exhibits under UV lamps abundant hydrous silica–uranyl coatings covering carbonated speleothems with radionuclides of 238U natural decay series. The long-lived radio-nuclides of the radium radioactive decay chain are responsible of the continuous regeneration of radon gas inside cave. The experimental work was focused to identify origin and remobilization processes of radio-nuclides and their latte settlement into the cave environment associated to mineral phases of speleothems and cave deposits.